BIOSOPE

Type Oceanographic cruise
Ship L'Atalante
Ship owner Ifremer
Dates 17/10/2004 - 15/12/2004
Chief scientist(s) CLAUSTRE Hervé , SCIANDRA Antoine

LABORATOIRE D'OCÉANOGRAPHIE DE VILLEFRANCHE-SUR-MER - UMR 7093

181 chemin du Lazaret

06230 Villefranche-sur-Mer

+33 (0)4 93 76 38 13

lov@obs-vlfr.fr

https://lov.imev-mer.fr/web/
DOI 10.17600/4010100
Objective The BIOSOPE (BIogeochemistry & Optics SOuth Pacific Experiment) survey's objective was to study the variability of biological, bio-geochemical and bio-optic properties of a range of trophic regimes during the austral summer in the South Pacific. These were the eutrophic area associated with the upwelling regime along the coasts of Chile; the mesotrophic regime of the Marquises islands plume which results from natural iron enrichment in the HLNC (High Nutrient Low Chlorophyll) waters of this subequatorial region; and finally the most oligotrophic area on earth, which is the center of the South Pacific gyre. This is one of the least known areas of the ocean, and has the interesting specificity of being far away from all sources of desert aerosols. The BIOSOPE survey was mainly based on observations acquired along a transect of ~8000 km, going from the Marquises Islands to Chile. The BIOSOPE project was supported by the French PROOF (biogeochemical processes and fluxes in the ocean) program. Internationally speaking, BIOSOPE falls under the SOLAS (IGBP's Surface Ocean Lower Atmosphere Study) and IMBER (Integrated Marine Biogeochemistry and Ecosystem Research) programs and is supported by three space agencies in the framework of their SeaWiFS and MODIS (NASA) and MERIS (ESA / CNES) color sensor validations.

Published data

Quéguiner Bernard, Rimmelin Peggy (2018). Biogenic and lithogenic particulate silica collected during the BIOSOPE (2004) cruise. https://doi.org/10.17882/55722


Data managed by SISMER

Bibliography

Publications

Archontikis Odysseas A., Millán Josué G., Andruleit Harald, Cros Lluïsa, Kleijne Annelies, Heldal Mikal, Doan-Nhu Hai, Winter Amos, Blanco-Bercial Leocadio, Young Jeremy R. (2023). Taxonomy and morphology of Calciopappus curvus sp. nov. (Syracosphaeraceae, Prymnesiophyceae), a novel appendage-bearing coccolithophore. Protist, 174(5), 125983 (16p.). Publisher's official version : https://doi.org/10.1016/j.protis.2023.125983 , Open Access version : https://archimer.ifremer.fr/doc/00848/96017/


Archontikis Odysseas A., Millán Josué G., Winter Amos, Young Jeremy R. (2023). Taxonomic re-evaluation of Ericiolus and Mercedesia (Prymnesiophyceae) and description of three new species. Phycologia, 62(2), 179-193. Publisher's official version : https://doi.org/10.1080/00318884.2023.2172841 , Open Access version : https://archimer.ifremer.fr/doc/00829/94059/


Chien Chia-Te, Durgadoo Jonathan V., Ehlert Dana, Frenger Ivy, Keller David P., Koeve Wolfgang, Kriest Iris, Landolfi Angela, Patara Lavinia, Wahl Sebastian, Oschlies Andreas (2022). FOCI-MOPS v1-integration of marine biogeochemistry within the Flexible Ocean and Climate Infrastructure version 1 (FOCI 1) Earth system model. Geoscientific Model Development, 15(15), 5987-6024. Publisher's official version : https://doi.org/10.5194/gmd-15-5987-2022 , Open Access version : https://archimer.ifremer.fr/doc/00788/90000/


Kramer Sasha J., Siegel David A., Maritorena Stéphane, Catlett Dylan (2022). Modeling surface ocean phytoplankton pigments from hyperspectral remote sensing reflectance on global scales. Remote Sensing Of Environment, 270, 112879 (14p.). Publisher's official version : https://doi.org/10.1016/j.rse.2021.112879 , Open Access version : https://archimer.ifremer.fr/doc/00743/85550/


Archontikis Odysseas A., Young Jeremy R. (2021). A reappraisal of the taxonomy and biodiversity of the extant coccolithophore genus Palusphaera (Rhabdosphaeraceae, Prymnesiophyceae). Phycologia, 60(6), 589-602. Publisher's official version : https://doi.org/10.1080/00318884.2021.1965758 , Open Access version : https://archimer.ifremer.fr/doc/00733/84466/


Puissant Agathe, El Hourany Roy, Charantonis Anastase Alexandre, Bowler Chris, Thiria Sylvie (2021). Inversion of Phytoplankton Pigment Vertical Profiles from Satellite Data Using Machine Learning. Remote Sensing, 13(8), 1445 (19p.). Publisher's official version : https://doi.org/10.3390/rs13081445 , Open Access version : https://archimer.ifremer.fr/doc/00698/80980/


Martinez Elodie, Rodier Martine, Pagano M., Sauzede R. (2020). Plankton spatial variability within the Marquesas archipelago, South Pacific. Journal Of Marine Systems, 212, 103432 (13p.). Publisher's official version : https://doi.org/10.1016/j.jmarsys.2020.103432 , Open Access version : https://archimer.ifremer.fr/doc/00648/75993/


Linge Johnsen S.A., Bollmann J. (2020). Segmentation, retardation and mass approximation of birefringent particles on a standard light microscope. Journal Of Microscopy, 280(1), 30-50. https://doi.org/10.1111/jmi.12932


Casey Kimberly A., Rousseaux Cecile S., Gregg Watson W., Boss Emmanuel, Chase Alison P., Craig Susanne E., Mouw Colleen B., Reynolds Rick A., Stramski Dariusz, Ackleson Steven G., Bricaud Annick, Schaeffer Blake, Lewis Marlon R., Maritorena Stéphane (2020). A global compilation of in situ aquatic high spectral resolution inherent and apparent optical property data for remote sensing applications. Earth System Science Data, 12(2), 1123-1139. Publisher's official version : https://doi.org/10.5194/essd-12-1123-2020 , Open Access version : https://archimer.ifremer.fr/doc/00509/62027/


Sauzède Raphaëlle, Martinez Elodie, Maes Christophe, de Fommervault Orens Pasqueron, Poteau Antoine, Mignot Alexandre, Claustre Hervé, Uitz Julia, Oziel Laurent, Maamaatuaiahutapu Keitapu, Rodier Martine, Schmechtig Catherine, Laurent Victoire (2020). Enhancement of phytoplankton biomass leeward of Tahiti as observed by Biogeochemical-Argo floats. Journal Of Marine Systems, 204, 103284 (16p.). Publisher's official version : https://doi.org/10.1016/j.jmarsys.2019.103284 , Open Access version : https://archimer.ifremer.fr/doc/00599/71130/


Raapoto Hirohiti, Martinez Elodie, Petrenko Anne, Doglioli Andrea, Gorgues Thomas, Sauzède Raphaëlle, Maamaatuaiahutapu Keitapu, Maes Christophe, Menkes Christophe, Lefèvre Jérôme (2019). Role of Iron in the Marquesas Island Mass Effect. Journal Of Geophysical Research-oceans, 124(11), 7781-7796. Publisher's official version : https://doi.org/10.1029/2019JC015275 , Open Access version : https://archimer.ifremer.fr/doc/00592/70397/


Martiny Adam C., Lomas Michael W., Fu Weiwei, Boyd Philip W., Chen Yuh-Ling L., Cutter Gregory A., Ellwood Michael J., Furuya Ken, Hashihama Fuminori, Kanda Jota, Karl David M., Kodama Taketoshi, Li Qian P., Ma Jian, Moutin Thierry, Woodward E. Malcolm S., Moore J. Keith (2019). Biogeochemical controls of surface ocean phosphate. Science Advances, 5(8), eaax0341 (10p.). Publisher's official version : https://doi.org/10.1126/sciadv.aax0341 , Open Access version : https://archimer.ifremer.fr/doc/00511/62308/


Leblanc Karine, Cornet Véronique, Rimmelin-Maury Peggy, Grosso Olivier, Hélias-Nunige Sandra, Brunet Camille, Claustre Hervé, Ras Joséphine, Leblond Nathalie, Quéguiner Bernard (2018). Silicon cycle in the tropical South Pacific: contribution to the global Si cycle and evidence for an active pico-sized siliceous plankton. Biogeosciences, 15(18), 5595-5620. Publisher's official version : https://doi.org/10.5194/bg-2018-149 , Open Access version : https://archimer.ifremer.fr/doc/00448/56006/


Dupouy Cecile, Frouin Robert, Tedetti Marc, Maillard Morgane, Rodier Martine, Lombard Fabien, Guidi Lionel, Picheral Marc, Neveux Jacques, Duhamel Solange, Charriere Bruno, Sempere Richard (2018). Diazotrophic Trichodesmium impact on UV-Vis radiance and pigment composition in the western tropical South Pacific. Biogeosciences, 15(16), 5249-5269. Publisher's official version : https://doi.org/10.5194/bg-15-5249-2018 , Open Access version : https://archimer.ifremer.fr/doc/00457/56824/


Dutheil Cyril, Aumont Olivier, Gorgues Thomas, Lorrain Anne, Bonnet Sophie, Rodier Martine, Dupouy Cecile, Shiozaki Takuhei, Menkes Christophe (2018). Modelling N2 fixation related to Trichodesmium sp.: driving processes and impacts on primary production in the tropical Pacific Ocean. Biogeosciences, 15(14), 4333-4352. Publisher's official version : https://doi.org/10.5194/bg-15-4333-2018 , Open Access version : https://archimer.ifremer.fr/doc/00419/53042/


Moutin Thierry, Wagener Thibaut, Caffin Mathieu, Fumenia Alain, Gimenez Audrey, Baklouti Melika, Bouruet-Aubertot Pascale, Pujo-Pay Mireille, Leblanc Karine, Lefevre Dominique, Nunige Sandra Helias, Leblond Nathalie, Grosso Olivier, de Verneil Alain (2018). Nutrient availability and the ultimate control of the biological carbon pump in the Western Tropical South Pacific Ocean. Biogeosciences, 15(9), 2961-2989. Publisher's official version : https://doi.org/10.5194/bg-15-2961-2018 , Open Access version : https://archimer.ifremer.fr/doc/00420/53113/


Van Wambeke France, Gimenez Audrey, Duhamel Solange, Dupouy Cecile, Lefevre Dominique, Pujo-Pay Mireille, Moutin Thierry (2018). Dynamics and controls of heterotrophic prokaryotic production in the western tropical South Pacific Ocean: links with diazotrophic and photosynthetic activity. Biogeosciences, 15(9), 2669-2689. Publisher's official version : https://doi.org/10.5194/bg-15-2669-2018 , Open Access version : https://archimer.ifremer.fr/doc/00448/56007/


Carlotti François, Pagano Marc, Guilloux Loïc, Donoso Katty, Valdés Valentina, Grosso Olivier, Hunt Brian P. V. (2018). Meso-zooplankton structure and functioning in the western tropical. South Pacific along the 20° parallel south during the OUTPACE survey (February-April 2015). Biogeosciences, 15(23), 7273-7297. Publisher's official version : https://doi.org/10.5194/bg-15-7273-2018 , Open Access version : https://archimer.ifremer.fr/doc/00435/54683/


Sauzède Raphaëlle, Martinez Elodie, Pasqueron De Fommervault Orens, Poteau Antoine, Mignot Alexandre, Maes Christophe, Claustre Hervé, Uitz Julia, Maamaatuaiahutapu Keitapu, Rodier Martine, Schmechtig Catherine, Laurent Victoire (2018). Seasonal dynamics and disturbance of phytoplankton biomass in the wake of Tahiti as observed by Biogeochemical-Argo floats. Biogeosciences Discussions, 35p. Publisher's official version : https://doi.org/10.5194/bg-2017-541 , Open Access version : https://archimer.ifremer.fr/doc/00421/53295/


Xing Xiaogang, Claustre Herve, Boss Emmanuel, Roesler Collin, Organelli Emanuele, Poteau Antoine, Barbieux Marie, D'Ortenzio Fabrizio (2017). Correction of profiles of in-situ chlorophyll fluorometry for the contribution of fluorescence originating from non-algal matter. Limnology And Oceanography-methods, 15(1), 80-93. Publisher's official version : https://doi.org/10.1002/lom3.10144 , Open Access version : https://archimer.ifremer.fr/doc/00661/77327/


Brewin Robert J. W., Sathyendranath Shubha, Jackson Thomas, Barlow Ray, Brotas Vanda, Airs Ruth, Lamont Tarron (2015). Influence of light in the mixed-layer on the parameters of a three-component model of phytoplankton size class. Remote Sensing Of Environment, 168, 437-450. https://doi.org/10.1016/j.rse.2015.07.004


Zhang Xiaodong, Huot Yannick, Bricaud Annick, Sosik Heidi M. (2015). Inversion of spectral absorption coefficients to infer phytoplankton size classes, chlorophyll concentration, and detrital matter. Applied Optics, 54(18), 5805-5816. https://doi.org/10.1364/AO.54.005805


Lee Zhongping, Wei Jianwei, Voss Ken, Lewis Marlon, Bricaud Annick, Huot Yannick (2015). Hyperspectral absorption coefficient of "pure" seawater in the range of 350-550 nm inverted from remote sensing reflectance. Applied Optics, 54(3), 546-558. https://doi.org/10.1364/AO.54.000546


Sauzede R., Claustre H., Jamet C., Uitz J., Ras J., Mignot A., D'Ortenzio F. (2015). Retrieving the vertical distribution of chlorophyll a concentration and phytoplankton community composition from in situ fluorescence profiles: A method based on a neural network with potential for global-scale applications. Journal Of Geophysical Research-oceans, 120(1), 451-470. https://doi.org/10.1002/2014JC010355


Kirkham Amy R., Lepere Cecile, Jardillier Ludwig E., Not Fabrice, Bouman Heather, Mead Andrew, Scanlan David J. (2013). A global perspective on marine photosynthetic picoeukaryote community structure. Isme Journal, 7(5), 922-936. https://doi.org/10.1038/ismej.2012.166


Organelli Emanuele, Bricaud Annick, Antoine David, Uitz Julia (2013). Multivariate approach for the retrieval of phytoplankton size structure from measured light absorption spectra in the Mediterranean Sea (BOUSSOLE site). Applied Optics, 52(11), 2257-2273. Publisher's official version : https://doi.org/http://dx.doi.org/10.1364/AO.52.002257 , Open Access version : https://archimer.ifremer.fr/doc/00185/29655/


Grenier Melanie, Jeandel Catherine, Lacan Francois, Vance Derek, Venchiarutti Celia, Cros Alexandre, Cravatte Sophie (2013). From the subtropics to the central equatorial Pacific Ocean: Neodymium isotopic composition and rare earth element concentration variations. Journal Of Geophysical Research-oceans, 118(2), 592-618. https://doi.org/10.1029/2012JC008239


Peloquin J., Swan C., Gruber N., Vogt M., Claustre H., Ras J., Uitz J., Barlow R., Behrenfeld M., Bidigare R., Dierssen H., Ditullio G., Fernandez E., Gallienne C., Gibb S., Goericke R., Harding L., Head E., Holligan P., Hooker S., Karl D., Landry M., Letelier R., Llewellyn C. A., Lomas M., Lucas M., Mannino A., Marty J. -C., Mitchell B. G., Muller-Karger F., Nelson N., O'Brien C., Prezelin B., Repeta D., Smith W. O., Jr., Smythe-Wright D., Stumpf R., Subramaniam A., Suzuki K., Trees C., Vernet M., Wasmund N., Wright S. (2013). The MAREDAT global database of high performance liquid chromatography marine pigment measurements. Earth System Science Data, 5(1), 109-123. Publisher's official version : https://doi.org/10.5194/essd-5-109-2013 , Open Access version : https://archimer.ifremer.fr/doc/00128/23975/


Matallana-Surget S., Villette C., Intertaglia Laurent, Joux Fabien, Bourrain Muriel, Lebaron Philippe (2012). Response to UVB radiation and oxidative stress of marine bacteria isolated from South Pacific Ocean and Mediterranean Sea. Journal of Photochemistry and Photobiology B: Biology, 117, 254-261. https://doi.org/10.1016/j.jphotobiol.2012.09.011


Thompson Anne W., Foster Rachel A., Krupke Andreas, Carter Brandon J., Musat Niculina, Vaulot Daniel, Kuypers Marcel M. M., Zehr Jonathan P. (2012). Unicellular Cyanobacterium Symbiotic with a Single-Celled Eukaryotic Alga. Science, 337(6101), 1546-1550. https://doi.org/10.1126/science.1222700


Vaulot Daniel, Lepere Cecile, Toulza Eve, de La Iglesia Rodrigo, Poulain Julie, Gaboyer Frederic, Moreau Herve, Vandepoele Klaas, Ulloa Osvaldo, Gavory Frederick, Piganeau Gwenael (2012). Metagenomes of the Picoalga Bathycoccus from the Chile Coastal Upwelling. Plos One, 7(6), -. Publisher's official version : https://doi.org/10.1371/journal.pone.0039648 , Open Access version : https://archimer.ifremer.fr/doc/00129/23987/


Xing Xiaogang, Morel Andre, Claustre Herve, D'Ortenzio Fabrizio, Poteau Antoine (2012). Combined processing and mutual interpretation of radiometry and fluorometry from autonomous profiling Bio-Argo floats: 2. Colored dissolved organic matter absorption retrieval. Journal Of Geophysical Research-oceans, 117(C4), 1-16. https://doi.org/10.1029/2011JC007632


Groundwater Heather, Twardowski Michael S., Dierssen Heidi M., Sciandra Antoine, Freeman Scott A. (2012). Determining Size Distributions and Composition of Particles Suspended in Water: A New SEM-EDS Protocol with Validation and Comparison to Other Methods. Journal Of Atmospheric And Oceanic Technology, 29(3), 433-449. https://doi.org/10.1175/JTECH-D-11-00026.1


Cornejo Marcela, Farias Laura (2012). Meridional variability of the vertical structure and air-sea fluxes of N2O off central Chile (30-40 degrees S). Progress In Oceanography, 92-95, 33-42. https://doi.org/10.1016/j.pocean.2011.07.016


Xing Xiaogang, Morel Andre, Claustre Herve, Antoine David, D'Ortenzio Fabrizio, Poteau Antoine, Mignot Alexandre (2011). Combined processing and mutual interpretation of radiometry and fluorimetry from autonomous profiling Bio-Argo floats: Chlorophyll a retrieval. Journal Of Geophysical Research-oceans, 116, -. https://doi.org/10.1029/2010JC006899


Mignot A., Claustre H., D'Ortenzio F., Xing X., Poteau A., Ras J. (2011). From the shape of the vertical profile of in vivo fluorescence to Chlorophyll-a concentration. Biogeosciences, 8(8), 2391-2406. Publisher's official version : https://doi.org/10.5194/bg-8-2391-2011 , Open Access version : https://archimer.ifremer.fr/doc/00248/35968/


Sauvadet Anne-Laure, Gobet AngeliqueORCID, Guillou Laure (2010). Comparative analysis between protist communities from the deep-sea pelagic ecosystem and specific deep hydrothermal habitats. Environmental Microbiology, 12(11), 2946-2964. https://doi.org/10.1111/j.1462-2920.2010.02272.x


Bricaud Annick, Babin Marcel, Claustre Herve, Ras Josephine, Tieche Fanny (2010). Light absorption properties and absorption budget of Southeast Pacific waters. Journal Of Geophysical Research-oceans, 115(C08009), 1-19. https://doi.org/10.1029/2009JC005517


Guidi Lionel, Stemmann Lars, Jackson George A., Ibanez Frederic, Claustre Herve, Legendre Louis, Picheral Marc, Gorsky Gabriel (2009). Effects of phytoplankton community on production, size and export of large aggregates: A world-ocean analysis. Limnology And Oceanography, 54(6), 1951-1963. https://doi.org/10.4319/lo.2009.54.6.1951


Morel Andre (2009). Are the empirical relationships describing the bio-optical properties of case 1 waters consistent and internally compatible? Journal Of Geophysical Research-oceans, 114(C01016), 15p. https://doi.org/10.1029/2008JC004803


Stemmann Lars, Youngbluth Marsh, Robert Kevin, Hosia Aino, Picheral Marc, Paterson Harriet, Ibanez Frederic, Guidi Lionel, Lombard Fabien, Gorsky Gabriel (2008). Global zoogeography of fragile macrozooplankton in the upper 100-1000 m inferred from the underwater video profiler. Ices Journal Of Marine Science, 65(3), 433-442. https://doi.org/10.1093/icesjms/fsn010


Wagener Thibaut, Guieu Cecile, Losno Remi, Bonnet Sophie, Mahowald Natalie (2008). Revisiting atmospheric dust export to the Southern Hemisphere ocean: Biogeochemical implications. Global Biogeochemical Cycles, 22(GB2006), 1-13. https://doi.org/10.1029/2007GB002984


Le Gall F., Rigaut-Jalabert F., Marie D., Garczarek L., Viprey M., Gobet AngeliqueORCID, Vaulot D. (2008). Picoplankton diversity in the South-East Pacific Ocean from cultures. Biogeosciences, 5(1), 203-214. Publisher's official version : https://doi.org/10.5194/bg-5-203-2008 , Open Access version : https://archimer.ifremer.fr/doc/00489/60073/


Morel A., Claustre H., Antoine D., Gentili B. (2007). Natural variability of bio-optical properties in Case 1 waters: attenuation and reflectance within the visible and near-UV spectral domains, as observed in South Pacific and Mediterranean waters. Biogeosciences, 4(5), 913-925. Publisher's official version : https://doi.org/10.5194/bg-4-913-2007 , Open Access version : https://archimer.ifremer.fr/doc/00209/32012/


Garczarek Laurence, Dufresne Alexis, Rousvoal Sylvie, West Nyree J., Mazard Sophie, Marie Dominique, Claustre Herve, Raimbault Patrick, Post Anton F., Scanlan David J., Partensky Frederic (2007). High vertical and low horizontal diversity of Prochlorococcus ecotypes in the Mediterranean Sea in summer. Fems Microbiology Ecology, 60(2), 189-206. https://doi.org/10.1111/j.1574-6941.2007.00297.x


Morel Andre, Gentili Bernard, Claustre Herve, Babin Marcel, Bricaud Annick, Ras Josephine, Tieche Fanny (2007). Optical properties of the "clearest" natural waters. Limnology And Oceanography, 52(1), 217-229. https://doi.org/10.4319/lo.2007.52.1.0217


Voss K. J., Morel A., Antoine D. (2007). Detailed validation of the bidirectional effect in various Case 1 waters for application to ocean color imagery. Biogeosciences, 4(5), 781-789. Publisher's official version : https://doi.org/10.5194/bg-4-781-2007 , Open Access version : https://archimer.ifremer.fr/doc/00209/32011/


Morel A, Belanger S (2006). Improved detection of turbid waters from ocean color sensors information. Remote Sensing Of Environment, 102(3-4), 237-249. https://doi.org/10.1016/j.rse.2006.01.022


Marie D, Zhu F, Balague V, Ras J, Vaulot D (2006). Eukaryotic picoplankton communities of the Mediterranean Sea in summer assessed by molecular approaches (DGGE, TTGE, QPCR). Fems Microbiology Ecology, 55(3), 403-415. https://doi.org/10.1111/j.1574-6941.2005.00058.x